About

Useful links

Bioinformatics & Predictions

  1. PredictPlantPTS1

  2. PPERO

  3. Target Signal Predictor

  4. SUBA

  5. SMART

  6. Promoter analysis

  7. PlantPAN 4.0_Promoter analysis

  8. PlantProm:Plant Promoter Database

  9. PCBase 2 database

  10. Arnold terminator predictions

  11. Transcription terminator prediction

  12. Promoters & Terminators tools

  13. TFs binding sites determination

  14. Promoter aalysis_Plant Care

  15. Promoter databases

  16. New PLACE (affrc.go.jp)

Phosphoproteome databases

  1. PlantsP

  2. PhosPhAt 4.0

  3. P3DB

  4. MASCP GATOR

  5. Motif-X

  6. PhosphoMotif Finder

  7. PP2A binding motifs

  8. ATHENA

  9. Proteomicsdb

Peroxisomal Databases

1- http://www.peroxisomedb.org/

2- http://www.microvesicles.org/

 

Gene Ontology

  1. http://www.gomapman.org/

  2. AgriGo

  3. AgriGo V2

  4. Plant GSEA

  5. Reactome

  6. DAVID

  7. Panther

  8. MOTIF LOGO

  9. Coexpression (ATTED)

  10. KEGG

  11. Gramene

  12. Biomart-Gramene

  13. g:Profiler – a web server for functional enrichment analysis and conversions of gene lists (ut.ee)

LIPIDOMICS

  1. ARALIP plant acyl lipid metabolism

Central Metabolism

Triticum aestivum

1-Triticum Genome_NCBI

1- Triticum dicoccoides (wild emmer wheat)_NCBI

1- Barley_NCBI

1- Rye_NCBI

2- MaizeGDB

3-National BioResource Project (NBRP)::KOMUGI -Integrated Wheat Science Database- (nig.ac.jp)

4- WHEATEXP

5- eFB Wheat

6- Wheat Genomics Resources | Dubcovsky Lab (ucdavis.edu)

7- expVIP (wheat-expression.com)

8- wheatRegNet (sibs.ac.cn)

9- KEGG-Wheat

10- KEGG-PATHWAYS_WHEAT

CRISPR-CAS9 Tools

GENE Expression and RNAseq

Molecular clonign tools:

1- Panic vectors

2- Seamless cloning-Takara-NEB-

The Research Council of Norway                                University of Calgary University of Stavanger